Fundamental Properties of Intensity, Form, and Motion Perception in the Visual Nervous Systems of Calliphora phaenicia and Musca domestica

Several classes of interneurons in the optic lobes and brain of the insects, Musca domestica and Calliphora phaenicia, have been studied in detail. Visual stimuli have been categorized on the basis of the properties of intensity, form, and motion. Response characteristics of the classes of neural units are described with respect to these three classes of visual stimuli. While those units that detect motion in select directions have a tonic response, form detection units have a phasic response only. Through correlation of the responses of these classes with visual stimuli, it is shown that these units integrate the responses of other units which have very small visual fields. The small-field units are presumed to integrate the output of a small group of adjacent retinula cells and to respond differentially to intensity, form, and motion. It is shown that the response of both form and motion detection units is independent of the direction of pattern intensity gradation. As a consequence of this independence, it is further shown that failure to detect motion properly must start at a spatial wavelength four times the effective sampling station spacing rather than twice as has been predicted previously

Trends and Composition—A Sedimentological-Chemical-Mineralogical Approach to Constrain the Origin of Quaternary Deposits and Landforms—From a Review to a Manual

In this study, six basic Quaternary landform series (LFS) and their sedimentary deposits (LFS1 aeolian, LFS 2.1 to 2.2 mass wasting, LFS 3 cryogenic-glacial, LFS 4.1 to 4.6 fluvial, LFS 5.1 to 5.2 coastal-marine, LFS 6.1 to 6.3 lacustrine) are subdivided into subtypes and examined with regard to their sedimentological parameters and their mineralogical and chemical compositions. Emphasis is placed on the textural (related to transport and deposition), compositional (sediment load/weight, Eh and pH) and geodynamic maturity of the sedimentary deposits which are influenced by the parent lithology and bedrock tectonic and by the climate during the last 2 Ma. To constrain the development of the LFS and their sediments, composite trend-line diagrams are designed combining sedimentological (x-axis) and chemical/mineralogical dataset (y-axis): (1) sorting vs. heavy mineral content; (2) sphericity of grains vs. silica/carbonate contents; and (3) median vs. Ti/Fe ratios. In addition, the x-y plots showing the log SiO2/Al2O3 vs. log Na2O/K2O are amended by a dataset of the three most common clay minerals, i.e., kaolinite-, mica-, and smectite-group clay minerals. Such joint sedimentological-chemical-mineralogical investigations focused on the depositional environment of unconsolidated clastic sediments of Quaternary age can be used to describe the economic geology and environmental geology of mineral deposits in the pre-Quaternary sedimentary series according to the phrase: “The Present is the key to the Past”. Both trend diagrams and compositional x-y plots can contribute to constraining the development of the full transect of landform series from the fluvial incision and slope retreat to reef islands fringing the coastal zone towards the open sea as far as they are built up of clastic sedimentary deposits enriched in siliceous and/or carbonate minerals. Climate zonation and crustal maturity are the exogenous and endogenous “drivers”, as can be deduced from the compositional (mineralogy and chemistry) and physical (transport and deposition) variations observed in the Quaternary sediments. The current study bridges the gap between a review only based on literature and a hybrid manual generated by practical field studies devoted to applied geosciences in economic and environmental geology (“E & E issue”). © 2022 by the author. Licensee MDPI, Basel, Switzerland

Unbiased sampling of globular lattice proteins in three dimensions

We present a Monte Carlo method that allows efficient and unbiased sampling of Hamiltonian walks on a cubic lattice. Such walks are self-avoiding and visit each lattice site exactly once. They are often used as simple models of globular proteins, upon adding suitable local interactions. Our algorithm can easily be equipped with such interactions, but we study here mainly the flexible homopolymer case where each conformation is generated with uniform probability. We argue that the algorithm is ergodic and has dynamical exponent z=0. We then use it to study polymers of size up to 64^3 = 262144 monomers. Results are presented for the effective interaction between end points, and the interaction with the boundaries of the system

Do shark declines create fear‐released systems?

We illustrate the theoretical plausibility that fishery removal of sharks can indirectly alter predation pressure on different fish species via the behavioural responses of mesoconsumers released from predator intimidation. Our dynamic state variable model of foraging decisions by harbour seals, a mesopredator, predicted indirect effects of the removal of Pacific sleeper sharks on two species consumed by seals, Pacific herring and walleye pollock, as mediated by seal behaviour. Herring, a fatty fish, form near-surface aggregations that often are ephemeral and widely dispersed. Pollock are found in the deeper strata preferred by sharks and have lower energy density than herring, but also are larger and their more continuous distribution potentially makes them the more predictable resource for seals. During simulations, predation risk from sharks produced an asymmetric trophic cascade mediated by the seal's underutilisation of deeper, riskier strata. Risk management by seals reduced mortality on pollock, which required riskier access in deep strata, while increasing mortality on herring, which could be accessed with less risk in shallow strata. This effect, however, attenuated if herring were scarcer and seal energy state was poor. During shark removal scenarios, seals shifted to deeper strata, increasing pollock consumption and substantially decreasing use of herring; the proportional change was greatest if seals were in good energy state. Prior studies have addressed how shark declines might affect community structure through density responses by species consumed by sharks; earlier models incorporating antipredator behaviour of the mesopredator (i.e. Ecosim/Ecospace) allow for activity reduction but not for the spatial shifts that altered the asymmetric trophic cascade in our simulations. Our results suggest that shark declines might have stronger ecological consequences than previously recognised if we account for spatial and diet shifts by mesoconsumers released from shark intimidation

Nonuniversal power law scaling in the probability distribution of scientific citations

We develop a model for the distribution of scientific citations. The model involves a dual mechanism: in the direct mechanism, the author of a new paper finds an old paper A and cites it. In the indirect mechanism, the author of a new paper finds an old paper A only via the reference list of a newer intermediary paper B, which has previously cited A. By comparison to citation databases, we find that papers having few citations are cited mainly by the direct mechanism. Papers already having many citations ('classics') are cited mainly by the indirect mechanism. The indirect mechanism gives a power-law tail. The 'tipping point' at which a paper becomes a classic is about 21 citations for papers published in the Institute for Scientific Information (ISI) Web of Science database in 1981, 29 for Physical Review D papers published from 1975-1994, and 39 for all publications from a list of high h-index chemists assembled in 2007. The power-law exponent is not universal. Individuals who are highly cited have a systematically smaller exponent than individuals who are less cited.Comment: 7 pages, 3 figures, 2 table

Hyperelastic cloaking theory: Transformation elasticity with pre-stressed solids

Transformation elasticity, by analogy with transformation acoustics and optics, converts material domains without altering wave properties, thereby enabling cloaking and related effects. By noting the similarity between transformation elasticity and the theory of incremental motion superimposed on finite pre-strain it is shown that the constitutive parameters of transformation elasticity correspond to the density and moduli of small-on-large theory. The formal equivalence indicates that transformation elasticity can be achieved by selecting a particular finite (hyperelastic) strain energy function, which for isotropic elasticity is semilinear strain energy. The associated elastic transformation is restricted by the requirement of statically equilibrated pre-stress. This constraint can be cast as \tr {\mathbf F} = constant, where $\mathbf{F}$ is the deformation gradient, subject to symmetry constraints, and its consequences are explored both analytically and through numerical examples of cloaking of anti-plane and in-plane wave motion.Comment: 20 pages, 5 figure

Markov processes follow from the principle of Maximum Caliber

Markov models are widely used to describe processes of stochastic dynamics. Here, we show that Markov models are a natural consequence of the dynamical principle of Maximum Caliber. First, we show that when there are different possible dynamical trajectories in a time-homogeneous process, then the only type of process that maximizes the path entropy, for any given singlet statistics, is a sequence of identical, independently distributed (i.i.d.) random variables, which is the simplest Markov process. If the data is in the form of sequentially pairwise statistics, then maximizing the caliber dictates that the process is Markovian with a uniform initial distribution. Furthermore, if an initial non-uniform dynamical distribution is known, or multiple trajectories are conditioned on an initial state, then the Markov process is still the only one that maximizes the caliber. Second, given a model, MaxCal can be used to compute the parameters of that model. We show that this procedure is equivalent to the maximum-likelihood method of inference in the theory of statistics.Comment: 4 page

Symmetry and designability for lattice protein models

Native protein folds often have a high degree of symmetry. We study the relationship between the symmetries of native proteins, and their designabilities -- how many different sequences encode a given native structure. Using a two-dimensional lattice protein model based on hydrophobicity, we find that those native structures that are encoded by the largest number of different sequences have high symmetry. However only certain symmetries are enhanced, e.g. x/y-mirror symmetry and $180^o$ rotation, while others are suppressed. If it takes a large number of mutations to destabilize the native state of a protein, then, by definition, the state is highly designable. Hence, our findings imply that insensitivity to mutation implies high symmetry. It appears that the relationship between designability and symmetry results because protein substructures are also designable. Native protein folds may therefore be symmetric because they are composed of repeated designable substructures.Comment: 13 pages, 10 figure

Analytical description of finite size effects for RNA secondary structures

The ensemble of RNA secondary structures of uniform sequences is studied analytically. We calculate the partition function for very long sequences and discuss how the cross-over length, beyond which asymptotic scaling laws apply, depends on thermodynamic parameters. For realistic choices of parameters this length can be much longer than natural RNA molecules. This has to be taken into account when applying asymptotic theory to interpret experiments or numerical results.Comment: 10 pages, 13 figures, published in Phys. Rev.